---
task_categories:
- zero-shot-classification
tags:
- biology
- genomics
- long-context
configs:
- config_name: hg38
  data_files:
    - split: test
      path: hg38.parquet
- config_name: ClinVar_VEP_results
  data_files:
    - split: test
      path: ClinVar_VEP_results.parquet
---

## Updates
**[2025-09-09]** We have added ClinVar variant effect prediction results to the repository. The evaluation dataset was sourced from [SongLab](https://huggingface.co/datasets/songlab/clinvar/tree/main). The benchmark includes comparisons of GENERator against Evo2, NT, NT-v2, HyenaDNA, GPN-MSA, CADD, phyloP, and phastCons.

## Abouts
The human reference genome data is sourced from the [NCBI website](https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000001405.40/). 

We have applied minor formatting adjustments to the dataset to facilitate streamlined data analysis.

## How to use
```python
from datasets import load_dataset

datasets = load_dataset("GenerTeam/variant-effect-prediction")
```