Update app.py
Browse files
app.py
CHANGED
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@@ -9,7 +9,6 @@ sys.modules["pyaudioop"] = audioop_mock
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import gradio as gr
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import modal
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from PIL import Image
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import numpy as np
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import io
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import datetime
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from huggingface_hub import InferenceClient
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@@ -18,7 +17,7 @@ from reportlab.lib import colors
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from reportlab.lib.units import cm
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from reportlab.platypus import SimpleDocTemplate, Paragraph, Spacer, Image as RLImage, Table, TableStyle, HRFlowable
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from reportlab.lib.styles import getSampleStyleSheet, ParagraphStyle
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from reportlab.lib.enums import TA_CENTER
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print("All imports OK")
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@@ -109,7 +108,6 @@ def generate_pdf(original_image, annotated_image, seen, alert, explanation):
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story.append(Spacer(1, 0.2*cm))
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story.append(HRFlowable(width="100%", thickness=2, color=colors.HexColor('#203a43')))
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story.append(Spacer(1, 0.4*cm))
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-
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story.append(Paragraph("Segmentation Output", section_style))
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img_width, img_height = 8.5*cm, 6.5*cm
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orig_buf = io.BytesIO(); original_image.save(orig_buf, format="PNG"); orig_buf.seek(0)
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@@ -125,14 +123,12 @@ def generate_pdf(original_image, annotated_image, seen, alert, explanation):
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('BOX',(0,0),(0,0),0.5,colors.HexColor('#dddddd')),
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('BOX',(1,0),(1,0),0.5,colors.HexColor('#dddddd')),]))
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story.append(img_table); story.append(Spacer(1, 0.5*cm))
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-
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story.append(Paragraph("Safety Assessment", section_style))
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if any(d in alert for d in DANGER_CLASSES):
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story.append(Paragraph(f"WARNING: {alert}", danger_style))
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else:
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story.append(Paragraph(f"SAFE: {alert}", safe_style))
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story.append(Spacer(1, 0.4*cm))
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-
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story.append(Paragraph("Detected Tissues & Instruments", section_style))
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table_data = [["Structure", "Confidence", "Risk Level"]]
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rows_danger = []
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@@ -159,12 +155,10 @@ def generate_pdf(original_image, annotated_image, seen, alert, explanation):
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if is_danger: det_style.append(('FONTNAME',(2,r),(2,r),'Helvetica-Bold'))
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det_table.setStyle(TableStyle(det_style))
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story.append(det_table); story.append(Spacer(1, 0.5*cm))
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-
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story.append(HRFlowable(width="100%", thickness=0.5, color=colors.HexColor('#cccccc')))
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story.append(Spacer(1, 0.3*cm))
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story.append(Paragraph("Anatomy Teaching Note", section_style))
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story.append(Paragraph(explanation, body_style)); story.append(Spacer(1, 0.5*cm))
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-
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story.append(HRFlowable(width="100%", thickness=0.5, color=colors.HexColor('#cccccc')))
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story.append(Spacer(1, 0.3*cm))
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model_data = [
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@@ -192,12 +186,65 @@ def generate_pdf(original_image, annotated_image, seen, alert, explanation):
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return pdf_path
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def segment_image(input_image, conf_threshold=0.25):
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global last_result, chat_context
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if input_image is None:
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return (None, "Please upload a surgical frame to begin.", "No image provided.",
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"No explanation yet.", gr.update(visible=False), gr.update(visible=False),
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gr.update(visible=False), gr.update(visible=False), gr.update(visible=False), []
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detector = get_detector()
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image_bytes = pil_to_bytes(input_image)
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@@ -252,12 +299,19 @@ def segment_image(input_image, conf_threshold=0.25):
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f"I've analysed the frame. Detected: **{', '.join(tissue_list) if tissue_list else 'no tissues'}**.\n\n"
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f"{explanation}\n\nFeel free to ask me anything about these structures or general laparoscopic surgery!"}]
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return (annotated_image, summary, alert, explanation,
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gr.update(visible=True), gr.update(visible=True),
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gr.update(value=q1, visible=bool(q1)),
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gr.update(value=q2, visible=bool(q2)),
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gr.update(value=q3, visible=bool(q3)),
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initial_chat
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def chat_response(message, history):
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@@ -312,91 +366,6 @@ body { font-family: 'Inter', sans-serif; }
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.footer-note { text-align: center; font-size: 0.78rem; color: #888; margin-top: 16px; padding-bottom: 24px; }
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#suggested-q button { background: rgba(32,58,67,0.08) !important; border: 1px solid #203a43 !important; color: #203a43 !important; border-radius: 999px !important; font-size: 0.82rem !important; padding: 6px 14px !important; }
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#suggested-q button:hover { background: #203a43 !important; color: white !important; }
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-
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/* ── Loading overlay animation ── */
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#loading-overlay {
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display: none;
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position: fixed;
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top: 0; left: 0; right: 0; bottom: 0;
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background: rgba(10, 20, 25, 0.88);
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z-index: 9999;
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flex-direction: column;
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align-items: center;
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justify-content: center;
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color: white;
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font-family: 'Inter', sans-serif;
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backdrop-filter: blur(4px);
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}
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#loading-overlay.active { display: flex; }
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.scan-ring {
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width: 80px; height: 80px;
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border: 4px solid rgba(255,255,255,0.08);
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border-top: 4px solid #4f98a3;
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border-right: 4px solid #4f98a3;
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border-radius: 50%;
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animation: spin 0.9s linear infinite;
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margin-bottom: 24px;
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}
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.scan-ring-outer {
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width: 110px; height: 110px;
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border: 2px solid rgba(79,152,163,0.2);
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border-top: 2px solid rgba(79,152,163,0.6);
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border-radius: 50%;
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animation: spin 1.8s linear infinite reverse;
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position: absolute;
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}
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.scan-center {
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display: flex; flex-direction: column;
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align-items: center; justify-content: center;
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position: relative; margin-bottom: 28px;
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width: 110px; height: 110px;
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}
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@keyframes spin { to { transform: rotate(360deg); } }
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@keyframes pulse { 0%,100% { opacity:0.6; } 50% { opacity:1; } }
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.scan-text { font-size: 1.05rem; font-weight: 500; letter-spacing: 0.04em; }
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.scan-sub { font-size: 0.78rem; opacity: 0.45; margin-top: 8px; letter-spacing: 0.06em; text-transform: uppercase; }
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.scan-dots span {
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display: inline-block; width: 6px; height: 6px;
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background: #4f98a3; border-radius: 50%; margin: 0 3px;
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animation: pulse 1.2s ease-in-out infinite;
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}
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.scan-dots span:nth-child(2) { animation-delay: 0.2s; }
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.scan-dots span:nth-child(3) { animation-delay: 0.4s; }
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"""
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loading_overlay_html = """
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<div id="loading-overlay">
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<div class="scan-center">
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<div class="scan-ring-outer"></div>
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<div class="scan-ring"></div>
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</div>
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<div class="scan-text">🔬 Analysing surgical frame</div>
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<div class="scan-dots" style="margin-top:10px">
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<span></span><span></span><span></span>
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</div>
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<div class="scan-sub">Running YOLOv8 on Modal GPU</div>
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</div>
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<script>
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window.showSurgiLoader = function() {
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document.getElementById('loading-overlay').classList.add('active');
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};
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window.hideSurgiLoader = function() {
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document.getElementById('loading-overlay').classList.remove('active');
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};
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// Attach to run button after Gradio renders
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function attachLoader() {
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var btn = document.querySelector('#run-btn button');
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if (btn) {
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btn.addEventListener('click', function() {
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window.showSurgiLoader();
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});
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} else {
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setTimeout(attachLoader, 500);
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}
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}
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document.addEventListener('DOMContentLoaded', attachLoader);
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setTimeout(attachLoader, 1500);
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</script>
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"""
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header_html = """
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@@ -404,7 +373,7 @@ header_html = """
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<h1>🔬 Surgical Tissue Segmentation</h1>
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<p>Upload a laparoscopic surgery frame — or click any example below. The AI identifies tissues, flags danger zones, and explains anatomy for surgical trainees.</p>
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<div class="badge-row">
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<span class="badge">
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<span class="badge">Modal GPU</span><span class="badge">CholecSeg8k Dataset</span>
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<span class="badge">13 Classes</span><span class="badge">mAP50: 0.581</span>
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</div>
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@@ -413,7 +382,6 @@ header_html = """
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with gr.Blocks(title="SurgiSight — Surgical Tissue Segmentation") as demo:
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gr.HTML(header_html)
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gr.HTML(loading_overlay_html)
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with gr.Row():
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with gr.Column(scale=1):
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@@ -425,6 +393,9 @@ with gr.Blocks(title="SurgiSight — Surgical Tissue Segmentation") as demo:
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with gr.Column(scale=1):
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output_img = gr.Image(type="pil", label="Output — Segmented Result", height=350)
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danger_box = gr.Textbox(label="⚠ Safety Alert", lines=2, elem_id="danger-box",
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placeholder="Safety alert will appear here...")
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output_text = gr.Textbox(label="Detected Tissues & Confidence", lines=6, elem_id="output-text",
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@@ -455,16 +426,11 @@ with gr.Blocks(title="SurgiSight — Surgical Tissue Segmentation") as demo:
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gr.HTML('<div class="footer-note">All footage from CholecSeg8k research dataset (MICCAI 2020). No patient data. | Built for Build Small Hackathon 2026</div>')
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# Run segmentation — show loader on click, hide when done
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run_btn.click(
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fn=None, js="() => window.showSurgiLoader()"
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).then(
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fn=segment_image,
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inputs=[input_img, conf_slider],
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outputs=[output_img, output_text, danger_box, explain_box,
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pdf_btn, chat_section, sq1, sq2, sq3, chatbot]
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).then(
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fn=None, js="() => window.hideSurgiLoader()"
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)
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pdf_btn.click(fn=export_pdf, inputs=[], outputs=[pdf_output]
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import gradio as gr
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import modal
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from PIL import Image
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import io
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import datetime
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from huggingface_hub import InferenceClient
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from reportlab.lib.units import cm
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from reportlab.platypus import SimpleDocTemplate, Paragraph, Spacer, Image as RLImage, Table, TableStyle, HRFlowable
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from reportlab.lib.styles import getSampleStyleSheet, ParagraphStyle
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+
from reportlab.lib.enums import TA_CENTER
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print("All imports OK")
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story.append(Spacer(1, 0.2*cm))
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story.append(HRFlowable(width="100%", thickness=2, color=colors.HexColor('#203a43')))
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story.append(Spacer(1, 0.4*cm))
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story.append(Paragraph("Segmentation Output", section_style))
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img_width, img_height = 8.5*cm, 6.5*cm
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orig_buf = io.BytesIO(); original_image.save(orig_buf, format="PNG"); orig_buf.seek(0)
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('BOX',(0,0),(0,0),0.5,colors.HexColor('#dddddd')),
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('BOX',(1,0),(1,0),0.5,colors.HexColor('#dddddd')),]))
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story.append(img_table); story.append(Spacer(1, 0.5*cm))
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story.append(Paragraph("Safety Assessment", section_style))
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if any(d in alert for d in DANGER_CLASSES):
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story.append(Paragraph(f"WARNING: {alert}", danger_style))
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else:
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story.append(Paragraph(f"SAFE: {alert}", safe_style))
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story.append(Spacer(1, 0.4*cm))
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story.append(Paragraph("Detected Tissues & Instruments", section_style))
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table_data = [["Structure", "Confidence", "Risk Level"]]
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rows_danger = []
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if is_danger: det_style.append(('FONTNAME',(2,r),(2,r),'Helvetica-Bold'))
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det_table.setStyle(TableStyle(det_style))
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story.append(det_table); story.append(Spacer(1, 0.5*cm))
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story.append(HRFlowable(width="100%", thickness=0.5, color=colors.HexColor('#cccccc')))
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story.append(Spacer(1, 0.3*cm))
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story.append(Paragraph("Anatomy Teaching Note", section_style))
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story.append(Paragraph(explanation, body_style)); story.append(Spacer(1, 0.5*cm))
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story.append(HRFlowable(width="100%", thickness=0.5, color=colors.HexColor('#cccccc')))
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story.append(Spacer(1, 0.3*cm))
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model_data = [
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return pdf_path
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LOADING_HTML = """
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<div id="surgi-loader" style="display:none; text-align:center; padding: 32px 20px;
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background: linear-gradient(135deg,#0f2027,#203a43); border-radius:14px; margin:12px 0;">
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<div style="display:inline-block; position:relative; width:70px; height:70px; margin-bottom:16px;">
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<div style="position:absolute;inset:0;border:3px solid rgba(255,255,255,0.08);
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border-top:3px solid #4f98a3; border-radius:50%;
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animation:surgiSpin 0.85s linear infinite;"></div>
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<div style="position:absolute;inset:-12px;border:2px solid rgba(79,152,163,0.15);
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border-top:2px solid rgba(79,152,163,0.5); border-radius:50%;
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animation:surgiSpin 1.7s linear infinite reverse;"></div>
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<div style="position:absolute;inset:22px;background:#4f98a3;border-radius:50%;
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animation:surgiPulse 1.2s ease-in-out infinite;"></div>
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</div>
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<div style="color:white;font-size:1rem;font-weight:500;letter-spacing:0.03em;">
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🔬 Analysing surgical frame...
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</div>
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<div style="color:rgba(255,255,255,0.4);font-size:0.75rem;margin-top:6px;letter-spacing:0.07em;text-transform:uppercase;">
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Running YOLOv8 on Modal GPU
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</div>
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<div style="margin-top:14px;">
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<span style="display:inline-block;width:7px;height:7px;background:#4f98a3;border-radius:50%;
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margin:0 4px;animation:surgiDot 1.2s ease-in-out infinite;"></span>
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<span style="display:inline-block;width:7px;height:7px;background:#4f98a3;border-radius:50%;
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margin:0 4px;animation:surgiDot 1.2s ease-in-out 0.2s infinite;"></span>
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<span style="display:inline-block;width:7px;height:7px;background:#4f98a3;border-radius:50%;
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margin:0 4px;animation:surgiDot 1.2s ease-in-out 0.4s infinite;"></span>
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</div>
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</div>
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<style>
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@keyframes surgiSpin { to { transform: rotate(360deg); } }
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@keyframes surgiPulse { 0%,100%{opacity:0.4;transform:scale(0.8)} 50%{opacity:1;transform:scale(1.1)} }
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@keyframes surgiDot { 0%,100%{opacity:0.3;transform:translateY(0)} 50%{opacity:1;transform:translateY(-4px)} }
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</style>
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<script>
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(function() {
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function hookRunButton() {
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var btn = document.querySelector('#run-btn button');
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if (!btn) { setTimeout(hookRunButton, 600); return; }
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btn.addEventListener('click', function() {
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document.getElementById('surgi-loader').style.display = 'block';
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});
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}
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if (document.readyState === 'loading') {
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document.addEventListener('DOMContentLoaded', function() { setTimeout(hookRunButton, 800); });
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} else {
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setTimeout(hookRunButton, 800);
|
| 235 |
+
}
|
| 236 |
+
})();
|
| 237 |
+
</script>
|
| 238 |
+
"""
|
| 239 |
+
|
| 240 |
+
|
| 241 |
def segment_image(input_image, conf_threshold=0.25):
|
| 242 |
global last_result, chat_context
|
| 243 |
if input_image is None:
|
| 244 |
return (None, "Please upload a surgical frame to begin.", "No image provided.",
|
| 245 |
"No explanation yet.", gr.update(visible=False), gr.update(visible=False),
|
| 246 |
+
gr.update(visible=False), gr.update(visible=False), gr.update(visible=False), [],
|
| 247 |
+
gr.update(value=LOADING_HTML.replace('display:block','display:none')))
|
| 248 |
|
| 249 |
detector = get_detector()
|
| 250 |
image_bytes = pil_to_bytes(input_image)
|
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|
| 299 |
f"I've analysed the frame. Detected: **{', '.join(tissue_list) if tissue_list else 'no tissues'}**.\n\n"
|
| 300 |
f"{explanation}\n\nFeel free to ask me anything about these structures or general laparoscopic surgery!"}]
|
| 301 |
|
| 302 |
+
# Return hidden loader HTML to replace it (hides the spinner)
|
| 303 |
+
hidden_loader = LOADING_HTML.replace(
|
| 304 |
+
'id="surgi-loader" style="display:none;',
|
| 305 |
+
'id="surgi-loader" style="display:none; visibility:hidden;'
|
| 306 |
+
)
|
| 307 |
+
|
| 308 |
return (annotated_image, summary, alert, explanation,
|
| 309 |
gr.update(visible=True), gr.update(visible=True),
|
| 310 |
gr.update(value=q1, visible=bool(q1)),
|
| 311 |
gr.update(value=q2, visible=bool(q2)),
|
| 312 |
gr.update(value=q3, visible=bool(q3)),
|
| 313 |
+
initial_chat,
|
| 314 |
+
gr.update(value=hidden_loader))
|
| 315 |
|
| 316 |
|
| 317 |
def chat_response(message, history):
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|
| 366 |
.footer-note { text-align: center; font-size: 0.78rem; color: #888; margin-top: 16px; padding-bottom: 24px; }
|
| 367 |
#suggested-q button { background: rgba(32,58,67,0.08) !important; border: 1px solid #203a43 !important; color: #203a43 !important; border-radius: 999px !important; font-size: 0.82rem !important; padding: 6px 14px !important; }
|
| 368 |
#suggested-q button:hover { background: #203a43 !important; color: white !important; }
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|
| 369 |
"""
|
| 370 |
|
| 371 |
header_html = """
|
|
|
|
| 373 |
<h1>🔬 Surgical Tissue Segmentation</h1>
|
| 374 |
<p>Upload a laparoscopic surgery frame — or click any example below. The AI identifies tissues, flags danger zones, and explains anatomy for surgical trainees.</p>
|
| 375 |
<div class="badge-row">
|
| 376 |
+
<span class="badge">YOLOv26n-seg</span><span class="badge">Llama 3.1 8B</span>
|
| 377 |
<span class="badge">Modal GPU</span><span class="badge">CholecSeg8k Dataset</span>
|
| 378 |
<span class="badge">13 Classes</span><span class="badge">mAP50: 0.581</span>
|
| 379 |
</div>
|
|
|
|
| 382 |
|
| 383 |
with gr.Blocks(title="SurgiSight — Surgical Tissue Segmentation") as demo:
|
| 384 |
gr.HTML(header_html)
|
|
|
|
| 385 |
|
| 386 |
with gr.Row():
|
| 387 |
with gr.Column(scale=1):
|
|
|
|
| 393 |
with gr.Column(scale=1):
|
| 394 |
output_img = gr.Image(type="pil", label="Output — Segmented Result", height=350)
|
| 395 |
|
| 396 |
+
# Loading animation — shown by JS on click, hidden when Python returns
|
| 397 |
+
loader_html = gr.HTML(value=LOADING_HTML)
|
| 398 |
+
|
| 399 |
danger_box = gr.Textbox(label="⚠ Safety Alert", lines=2, elem_id="danger-box",
|
| 400 |
placeholder="Safety alert will appear here...")
|
| 401 |
output_text = gr.Textbox(label="Detected Tissues & Confidence", lines=6, elem_id="output-text",
|
|
|
|
| 426 |
|
| 427 |
gr.HTML('<div class="footer-note">All footage from CholecSeg8k research dataset (MICCAI 2020). No patient data. | Built for Build Small Hackathon 2026</div>')
|
| 428 |
|
|
|
|
| 429 |
run_btn.click(
|
|
|
|
|
|
|
| 430 |
fn=segment_image,
|
| 431 |
inputs=[input_img, conf_slider],
|
| 432 |
outputs=[output_img, output_text, danger_box, explain_box,
|
| 433 |
+
pdf_btn, chat_section, sq1, sq2, sq3, chatbot, loader_html]
|
|
|
|
|
|
|
| 434 |
)
|
| 435 |
|
| 436 |
pdf_btn.click(fn=export_pdf, inputs=[], outputs=[pdf_output]
|