Update app.py
Browse files
app.py
CHANGED
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@@ -11,7 +11,6 @@ import modal
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from PIL import Image
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import numpy as np
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import io
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import base64
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import datetime
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from huggingface_hub import InferenceClient
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from reportlab.lib.pagesizes import A4
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@@ -19,20 +18,9 @@ from reportlab.lib import colors
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from reportlab.lib.units import cm
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from reportlab.platypus import SimpleDocTemplate, Paragraph, Spacer, Image as RLImage, Table, TableStyle, HRFlowable
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from reportlab.lib.styles import getSampleStyleSheet, ParagraphStyle
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from reportlab.lib.enums import TA_CENTER, TA_LEFT
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from reportlab.pdfgen import canvas
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from reportlab.platypus import BaseDocTemplate, PageTemplate, Frame
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os.environ["MODAL_TOKEN_SECRET"] = os.environ.get("MODAL_TOKEN_SECRET", "")
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SurgiSightDetector = modal.Cls.from_name("surgisight", "SurgiSightDetector")
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detector = SurgiSightDetector()
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client = InferenceClient(
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model="meta-llama/Llama-3.1-8B-Instruct",
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token=os.environ.get("HF_TOKEN")
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)
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CLASS_NAMES = [
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"Black Background", "Abdominal Wall", "Liver", "Gastrointestinal Tract",
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@@ -40,9 +28,23 @@ CLASS_NAMES = [
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"L-hook Electrocautery", "Gallbladder", "Hepatic Vein", "Liver Ligament"
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]
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DANGER_CLASSES = ["Hepatic Vein", "Cystic Duct", "Blood"]
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# Store last result globally for PDF generation
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last_result = {}
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def pil_to_bytes(pil_image):
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@@ -51,69 +53,67 @@ def pil_to_bytes(pil_image):
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return buf.getvalue()
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def generate_pdf(original_image, annotated_image, seen, alert, explanation):
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pdf_path = "/tmp/surgisight_report.pdf"
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doc = SimpleDocTemplate(
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pdf_path,
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leftMargin=2*cm,
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topMargin=2*cm,
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bottomMargin=2*cm
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)
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styles = getSampleStyleSheet()
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# Custom styles
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title_style = ParagraphStyle(
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'Title', parent=styles['Title'],
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fontSize=22, textColor=colors.HexColor('#0f2027'),
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spaceAfter=4, fontName='Helvetica-Bold', alignment=TA_CENTER
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subtitle_style = ParagraphStyle(
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'Subtitle', parent=styles['Normal'],
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fontSize=10, textColor=colors.HexColor('#888888'),
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spaceAfter=2, alignment=TA_CENTER
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section_style = ParagraphStyle(
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'Section', parent=styles['Normal'],
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fontSize=13, textColor=colors.HexColor('#203a43'),
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spaceAfter=6, spaceBefore=12, fontName='Helvetica-Bold'
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body_style = ParagraphStyle(
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'Body', parent=styles['Normal'],
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fontSize=10, textColor=colors.HexColor('#1a1a1a'),
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spaceAfter=4, leading=16
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danger_style = ParagraphStyle(
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'Danger', parent=styles['Normal'],
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fontSize=10, textColor=colors.HexColor('#cc0000'),
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spaceAfter=4, leading=16, fontName='Helvetica-Bold',
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backColor=colors.HexColor('#fff0f0'),
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)
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safe_style = ParagraphStyle(
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'Safe', parent=styles['Normal'],
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fontSize=10, textColor=colors.HexColor('#1a7a40'),
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spaceAfter=4, leading=16, fontName='Helvetica-Bold',
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backColor=colors.HexColor('#f0fff4'),
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)
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caption_style = ParagraphStyle(
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'Caption', parent=styles['Normal'],
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fontSize=8, textColor=colors.HexColor('#888888'),
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alignment=TA_CENTER, spaceAfter=4
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'Footer', parent=styles['Normal'],
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fontSize=8, textColor=colors.HexColor('#aaaaaa'),
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alignment=TA_CENTER
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)
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story = []
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timestamp = datetime.datetime.now().strftime("%B %d, %Y at %H:%M")
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# ββ Header ββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββ
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story.append(Spacer(1, 0.3*cm))
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story.append(Paragraph("SurgiSight", title_style))
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story.append(Paragraph("Surgical Anatomy Analysis Report", subtitle_style))
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@@ -122,100 +122,80 @@ def generate_pdf(original_image, annotated_image, seen, alert, explanation):
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story.append(HRFlowable(width="100%", thickness=2, color=colors.HexColor('#203a43')))
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story.append(Spacer(1, 0.4*cm))
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# ββ Images side by side βββββββββββββββββββββββββββββββββββββββββββββββββββ
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story.append(Paragraph("Segmentation Output", section_style))
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img_width = 8.5*cm
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img_height = 6.5*cm
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orig_buf = io.BytesIO()
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original_image.save(orig_buf, format="PNG")
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orig_buf.seek(0)
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orig_rl = RLImage(orig_buf, width=img_width, height=img_height)
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ann_buf = io.BytesIO()
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annotated_image.save(ann_buf, format="PNG")
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ann_buf.seek(0)
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ann_rl = RLImage(ann_buf, width=img_width, height=img_height)
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img_table = Table(
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[[
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[Paragraph("Original Frame", caption_style), Paragraph("AI Segmented Output", caption_style)]],
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colWidths=[img_width + 0.5*cm, img_width + 0.5*cm]
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)
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img_table.setStyle(TableStyle([
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('ALIGN', (0,0), (-1,-1), 'CENTER'),
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('VALIGN', (0,0), (-1,-1), 'MIDDLE'),
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('BACKGROUND', (0,0), (-1,0), colors.HexColor('#f5f5f5')),
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('ROUNDEDCORNERS', [6, 6, 6, 6]),
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('BOX', (0,0), (0,0), 0.5, colors.HexColor('#dddddd')),
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('BOX', (1,0), (1,0), 0.5, colors.HexColor('#dddddd')),
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]))
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story.append(img_table)
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story.append(Spacer(1, 0.5*cm))
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# ββ Safety Alert ββββββββββββββββββββββββββββββββββββββββββββββββββββββββββ
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story.append(Paragraph("Safety Assessment", section_style))
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if any(d in alert for d in DANGER_CLASSES):
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story.append(Paragraph(f"
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else:
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story.append(Paragraph(f"
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story.append(Spacer(1, 0.4*cm))
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# ββ Detection Results Table βββββββββββββββββββββββββββββββββββββββββββββββ
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story.append(Paragraph("Detected Tissues & Instruments", section_style))
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table_data = [["Structure", "Confidence", "Risk Level"]]
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for name, conf in sorted(seen.items(), key=lambda x: -x[1]):
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if name == "Black Background":
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continue
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risk = "
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table_data.append([name, f"{conf_pct} {bar}", risk])
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det_table = Table(table_data, colWidths=[6*cm, 7*cm, 3.5*cm])
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('BACKGROUND', (0,0), (-1,0), colors.HexColor('#203a43')),
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('TEXTCOLOR', (0,0), (-1,0), colors.white),
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('FONTNAME', (0,0), (-1,0), 'Helvetica-Bold'),
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('FONTSIZE', (0,0), (-1,0), 10),
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('ALIGN', (0,0), (-1,-1), 'LEFT'),
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('VALIGN', (0,0), (-1,-1), 'MIDDLE'),
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('FONTSIZE', (0,1), (-1,-1), 9),
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('ROWBACKGROUNDS', (0,1), (-1,-1), [colors.HexColor('#f9f9f9'), colors.white]),
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('GRID', (0,0), (-1,-1), 0.3, colors.HexColor('#dddddd')),
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('TOPPADDING', (0,0), (-1,-1), 6),
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('BOTTOMPADDING', (0,0), (-1,-1), 6),
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('LEFTPADDING', (0,0), (-1,-1), 8),
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]
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if
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else:
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det_table_style.append(('TEXTCOLOR', (2, i+1), (2, i+1), colors.HexColor('#1a7a40')))
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det_table.setStyle(TableStyle(det_table_style))
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story.append(det_table)
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story.append(Spacer(1, 0.5*cm))
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# ββ Anatomy Explanation βββββββββββββββββββββββββββββββββββββββββββββββββββ
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story.append(HRFlowable(width="100%", thickness=0.5, color=colors.HexColor('#cccccc')))
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story.append(Spacer(1, 0.3*cm))
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story.append(Paragraph("Anatomy Teaching Note", section_style))
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story.append(Paragraph(explanation, body_style))
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story.append(Spacer(1, 0.5*cm))
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# ββ Model Info ββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββ
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story.append(HRFlowable(width="100%", thickness=0.5, color=colors.HexColor('#cccccc')))
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story.append(Spacer(1, 0.3*cm))
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model_data = [
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["Detection Model", "
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["LLM", "Meta Llama 3.1 8B Instruct"],
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["Inference", "Modal GPU (T4)"],
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["Dataset", "CholecSeg8k β 8,080 frames, 13 classes"],
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]
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model_table = Table(model_data, colWidths=[4.5*cm, 12*cm])
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model_table.setStyle(TableStyle([
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('FONTNAME', (0,0), (0,-1), 'Helvetica-Bold'),
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('FONTSIZE', (0,0), (-1,-1), 8),
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('TEXTCOLOR', (0,0), (0,-1), colors.HexColor('#203a43')),
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('TEXTCOLOR', (1,0), (1,-1), colors.HexColor('#555555')),
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('VALIGN', (0,0), (-1,-1), 'TOP'),
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('TOPPADDING', (0,0), (-1,-1), 3),
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('BOTTOMPADDING', (0,0), (-1,-1), 3),
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('ROWBACKGROUNDS', (0,0), (-1,-1), [colors.HexColor('#f5f5f5'), colors.white]),
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]))
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story.append(model_table)
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story.append(Spacer(1, 0.4*cm))
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# ββ Disclaimer ββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββ
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story.append(HRFlowable(width="100%", thickness=1, color=colors.HexColor('#203a43')))
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story.append(Spacer(1, 0.2*cm))
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story.append(Paragraph(
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"
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"It is NOT a medical device and must not be used for clinical decision-making. "
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"All demo footage is from the publicly available CholecSeg8k research dataset β no real patient data involved.",
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footer_style
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))
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story.append(Paragraph("Built for Build Small Hackathon 2026 Β· huggingface.co/build-small-hackathon", footer_style))
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doc.build(story)
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return pdf_path
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def segment_image(input_image, conf_threshold=0.25):
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global last_result
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if input_image is None:
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return None, "Please upload a surgical frame to begin.", "No image provided.",
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image_bytes = pil_to_bytes(input_image)
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result = detector.run.remote(image_bytes, conf_threshold)
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else:
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alert = "All clear β no critical structures flagged."
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# Store for PDF generation
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last_result = {
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"original": input_image,
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"
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"seen": seen,
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"alert": alert,
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"explanation": explanation
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}
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def export_pdf():
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global last_result
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if not last_result:
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return None
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last_result["original"],
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last_result["
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last_result["seen"],
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last_result["alert"],
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last_result["explanation"]
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)
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return pdf_path
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css = """
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#danger-box textarea { font-family: 'Courier New', monospace !important; font-size: 0.9rem !important; font-weight: bold !important; background: #1a0a0a !important; color: #ff6b6b !important; border-radius: 10px !important; border: 1px solid #ff4444 !important; }
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#explain-box textarea { font-family: 'Inter', sans-serif !important; font-size: 0.88rem !important; line-height: 1.7 !important; background: #0a1a0f !important; color: #6ee7b7 !important; border-radius: 10px !important; border: 1px solid #34d399 !important; }
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.footer-note { text-align: center; font-size: 0.78rem; color: #888; margin-top: 16px; padding-bottom: 24px; }
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#
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"""
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header_html = """
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<h1>π¬ Surgical Tissue Segmentation</h1>
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<p>Upload a laparoscopic surgery frame β or click any example below. The AI identifies tissues, flags danger zones, and explains anatomy for surgical trainees.</p>
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<div class="badge-row">
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<span class="badge">
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<span class="badge">Llama 3.1 8B</span>
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<span class="badge">Modal GPU</span>
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<span class="badge">CholecSeg8k Dataset</span>
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with gr.Blocks(title="SurgiSight β Surgical Tissue Segmentation") as demo:
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gr.HTML(header_html)
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with gr.Row():
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with gr.Column(scale=1):
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input_img = gr.Image(type="pil", label="Input β Laparoscopic Frame", height=350)
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@@ -383,14 +417,40 @@ with gr.Blocks(title="SurgiSight β Surgical Tissue Segmentation") as demo:
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placeholder="Safety alert will appear here after running segmentation...")
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output_text = gr.Textbox(label="Detected Tissues & Confidence", lines=6, elem_id="output-text",
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placeholder="Tissue detection results will appear here...")
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explain_box = gr.Textbox(label="π§ Anatomy Explanation
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-
lines=
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placeholder="AI anatomy explanation will appear here after segmentation...")
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with gr.Row():
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-
pdf_btn = gr.Button("π Download Full Report (PDF)", visible=False,
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pdf_output = gr.File(label="Your Report", visible=False)
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gr.Examples(
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examples=[
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["examples/frame_80_endo.png"],
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@@ -402,20 +462,28 @@ with gr.Blocks(title="SurgiSight β Surgical Tissue Segmentation") as demo:
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examples_per_page=3
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)
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run_btn.click(
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fn=segment_image,
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inputs=[input_img, conf_slider],
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-
outputs=[output_img, output_text, danger_box, explain_box,
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show_progress="full"
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)
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pdf_btn.click(
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fn=export_pdf,
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inputs=[],
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outputs=[pdf_output]
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).then(fn=lambda: gr.update(visible=True), outputs=[pdf_output])
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-
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if __name__ == "__main__":
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demo.launch(css=css
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from PIL import Image
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import numpy as np
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import io
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import datetime
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from huggingface_hub import InferenceClient
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from reportlab.lib.pagesizes import A4
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from reportlab.lib.units import cm
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from reportlab.platypus import SimpleDocTemplate, Paragraph, Spacer, Image as RLImage, Table, TableStyle, HRFlowable
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from reportlab.lib.styles import getSampleStyleSheet, ParagraphStyle
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+
from reportlab.lib.enums import TA_CENTER, TA_LEFT
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print("All imports OK")
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CLASS_NAMES = [
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"Black Background", "Abdominal Wall", "Liver", "Gastrointestinal Tract",
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"L-hook Electrocautery", "Gallbladder", "Hepatic Vein", "Liver Ligament"
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]
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DANGER_CLASSES = ["Hepatic Vein", "Cystic Duct", "Blood"]
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last_result = {}
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+
chat_context = {} # stores detected tissues for chat context
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+
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try:
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client = InferenceClient(
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model="meta-llama/Llama-3.1-8B-Instruct",
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token=os.environ.get("HF_TOKEN")
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)
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print("InferenceClient OK")
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except Exception as e:
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client = None
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print(f"InferenceClient failed (non-fatal): {e}")
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+
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+
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def get_detector():
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SurgiSightDetector = modal.Cls.from_name("surgisight", "SurgiSightDetector")
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return SurgiSightDetector()
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def pil_to_bytes(pil_image):
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return buf.getvalue()
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+
def generate_suggested_questions(tissue_list):
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"""Generate 3 contextual suggested questions based on detected tissues."""
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questions = []
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# Danger-specific questions first
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for t in tissue_list:
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if t == "Hepatic Vein":
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questions.append("Why is the hepatic vein so dangerous to nick?")
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elif t == "Cystic Duct":
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questions.append("How do I safely identify the cystic duct?")
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elif t == "Blood":
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questions.append("What are the steps to control unexpected bleeding?")
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elif t == "Gallbladder":
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questions.append("What is the critical view of safety for gallbladder removal?")
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elif t == "L-hook Electrocautery":
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questions.append("What are the risks of using electrocautery near the bile duct?")
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elif t == "Liver":
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questions.append("How does liver retraction affect visibility in laparoscopic surgery?")
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if len(questions) >= 2:
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break
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| 75 |
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# Always add a general fallback
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questions.append("What are common complications in laparoscopic cholecystectomy?")
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return questions[:3]
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+
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+
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def generate_pdf(original_image, annotated_image, seen, alert, explanation):
|
| 81 |
pdf_path = "/tmp/surgisight_report.pdf"
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| 82 |
doc = SimpleDocTemplate(
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pdf_path, pagesize=A4,
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+
rightMargin=2*cm, leftMargin=2*cm,
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topMargin=2*cm, bottomMargin=2*cm
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)
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styles = getSampleStyleSheet()
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title_style = ParagraphStyle('Title', parent=styles['Title'],
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fontSize=22, textColor=colors.HexColor('#0f2027'),
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+
spaceAfter=4, fontName='Helvetica-Bold', alignment=TA_CENTER)
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+
subtitle_style = ParagraphStyle('Subtitle', parent=styles['Normal'],
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fontSize=10, textColor=colors.HexColor('#888888'),
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+
spaceAfter=2, alignment=TA_CENTER)
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+
section_style = ParagraphStyle('Section', parent=styles['Normal'],
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fontSize=13, textColor=colors.HexColor('#203a43'),
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+
spaceAfter=6, spaceBefore=12, fontName='Helvetica-Bold')
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+
body_style = ParagraphStyle('Body', parent=styles['Normal'],
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| 98 |
fontSize=10, textColor=colors.HexColor('#1a1a1a'),
|
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+
spaceAfter=4, leading=16)
|
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+
danger_style = ParagraphStyle('Danger', parent=styles['Normal'],
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fontSize=10, textColor=colors.HexColor('#cc0000'),
|
| 102 |
spaceAfter=4, leading=16, fontName='Helvetica-Bold',
|
| 103 |
+
backColor=colors.HexColor('#fff0f0'), borderPadding=(6,8,6,8))
|
| 104 |
+
safe_style = ParagraphStyle('Safe', parent=styles['Normal'],
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| 105 |
fontSize=10, textColor=colors.HexColor('#1a7a40'),
|
| 106 |
spaceAfter=4, leading=16, fontName='Helvetica-Bold',
|
| 107 |
+
backColor=colors.HexColor('#f0fff4'), borderPadding=(6,8,6,8))
|
| 108 |
+
caption_style = ParagraphStyle('Caption', parent=styles['Normal'],
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| 109 |
fontSize=8, textColor=colors.HexColor('#888888'),
|
| 110 |
+
alignment=TA_CENTER, spaceAfter=4)
|
| 111 |
+
footer_style = ParagraphStyle('Footer', parent=styles['Normal'],
|
| 112 |
+
fontSize=8, textColor=colors.HexColor('#aaaaaa'), alignment=TA_CENTER)
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|
| 113 |
|
| 114 |
story = []
|
| 115 |
timestamp = datetime.datetime.now().strftime("%B %d, %Y at %H:%M")
|
| 116 |
|
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|
|
| 117 |
story.append(Spacer(1, 0.3*cm))
|
| 118 |
story.append(Paragraph("SurgiSight", title_style))
|
| 119 |
story.append(Paragraph("Surgical Anatomy Analysis Report", subtitle_style))
|
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|
| 122 |
story.append(HRFlowable(width="100%", thickness=2, color=colors.HexColor('#203a43')))
|
| 123 |
story.append(Spacer(1, 0.4*cm))
|
| 124 |
|
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|
| 125 |
story.append(Paragraph("Segmentation Output", section_style))
|
|
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|
| 126 |
img_width = 8.5*cm
|
| 127 |
img_height = 6.5*cm
|
|
|
|
| 128 |
orig_buf = io.BytesIO()
|
| 129 |
original_image.save(orig_buf, format="PNG")
|
| 130 |
orig_buf.seek(0)
|
|
|
|
|
|
|
| 131 |
ann_buf = io.BytesIO()
|
| 132 |
annotated_image.save(ann_buf, format="PNG")
|
| 133 |
ann_buf.seek(0)
|
|
|
|
|
|
|
| 134 |
img_table = Table(
|
| 135 |
+
[[RLImage(orig_buf, width=img_width, height=img_height),
|
| 136 |
+
RLImage(ann_buf, width=img_width, height=img_height)],
|
| 137 |
[Paragraph("Original Frame", caption_style), Paragraph("AI Segmented Output", caption_style)]],
|
| 138 |
colWidths=[img_width + 0.5*cm, img_width + 0.5*cm]
|
| 139 |
)
|
| 140 |
img_table.setStyle(TableStyle([
|
| 141 |
+
('ALIGN', (0,0), (-1,-1), 'CENTER'), ('VALIGN', (0,0), (-1,-1), 'MIDDLE'),
|
|
|
|
| 142 |
('BACKGROUND', (0,0), (-1,0), colors.HexColor('#f5f5f5')),
|
|
|
|
| 143 |
('BOX', (0,0), (0,0), 0.5, colors.HexColor('#dddddd')),
|
| 144 |
('BOX', (1,0), (1,0), 0.5, colors.HexColor('#dddddd')),
|
| 145 |
]))
|
| 146 |
story.append(img_table)
|
| 147 |
story.append(Spacer(1, 0.5*cm))
|
| 148 |
|
|
|
|
| 149 |
story.append(Paragraph("Safety Assessment", section_style))
|
| 150 |
if any(d in alert for d in DANGER_CLASSES):
|
| 151 |
+
story.append(Paragraph(f"WARNING: {alert}", danger_style))
|
| 152 |
else:
|
| 153 |
+
story.append(Paragraph(f"SAFE: {alert}", safe_style))
|
| 154 |
story.append(Spacer(1, 0.4*cm))
|
| 155 |
|
|
|
|
| 156 |
story.append(Paragraph("Detected Tissues & Instruments", section_style))
|
|
|
|
| 157 |
table_data = [["Structure", "Confidence", "Risk Level"]]
|
| 158 |
+
rows_danger = []
|
| 159 |
for name, conf in sorted(seen.items(), key=lambda x: -x[1]):
|
| 160 |
if name == "Black Background":
|
| 161 |
continue
|
| 162 |
+
risk = "DANGER" if name in DANGER_CLASSES else "Safe"
|
| 163 |
+
bar = "\u2588" * int(conf * 10) + "\u2591" * (10 - int(conf * 10))
|
| 164 |
+
table_data.append([name, f"{conf:.1%} {bar}", risk])
|
| 165 |
+
rows_danger.append(name in DANGER_CLASSES)
|
|
|
|
|
|
|
| 166 |
det_table = Table(table_data, colWidths=[6*cm, 7*cm, 3.5*cm])
|
| 167 |
+
det_style = [
|
| 168 |
('BACKGROUND', (0,0), (-1,0), colors.HexColor('#203a43')),
|
| 169 |
('TEXTCOLOR', (0,0), (-1,0), colors.white),
|
| 170 |
('FONTNAME', (0,0), (-1,0), 'Helvetica-Bold'),
|
| 171 |
('FONTSIZE', (0,0), (-1,0), 10),
|
| 172 |
+
('ALIGN', (0,0), (-1,-1), 'LEFT'), ('VALIGN', (0,0), (-1,-1), 'MIDDLE'),
|
|
|
|
| 173 |
('FONTSIZE', (0,1), (-1,-1), 9),
|
| 174 |
('ROWBACKGROUNDS', (0,1), (-1,-1), [colors.HexColor('#f9f9f9'), colors.white]),
|
| 175 |
('GRID', (0,0), (-1,-1), 0.3, colors.HexColor('#dddddd')),
|
| 176 |
+
('TOPPADDING', (0,0), (-1,-1), 6), ('BOTTOMPADDING', (0,0), (-1,-1), 6),
|
|
|
|
| 177 |
('LEFTPADDING', (0,0), (-1,-1), 8),
|
| 178 |
]
|
| 179 |
+
for i, is_danger in enumerate(rows_danger):
|
| 180 |
+
r = i + 1
|
| 181 |
+
col = colors.HexColor('#cc0000') if is_danger else colors.HexColor('#1a7a40')
|
| 182 |
+
det_style.append(('TEXTCOLOR', (2,r), (2,r), col))
|
| 183 |
+
if is_danger:
|
| 184 |
+
det_style.append(('FONTNAME', (2,r), (2,r), 'Helvetica-Bold'))
|
| 185 |
+
det_table.setStyle(TableStyle(det_style))
|
|
|
|
|
|
|
|
|
|
|
|
|
| 186 |
story.append(det_table)
|
| 187 |
story.append(Spacer(1, 0.5*cm))
|
| 188 |
|
|
|
|
| 189 |
story.append(HRFlowable(width="100%", thickness=0.5, color=colors.HexColor('#cccccc')))
|
| 190 |
story.append(Spacer(1, 0.3*cm))
|
| 191 |
story.append(Paragraph("Anatomy Teaching Note", section_style))
|
| 192 |
story.append(Paragraph(explanation, body_style))
|
| 193 |
story.append(Spacer(1, 0.5*cm))
|
| 194 |
|
|
|
|
| 195 |
story.append(HRFlowable(width="100%", thickness=0.5, color=colors.HexColor('#cccccc')))
|
| 196 |
story.append(Spacer(1, 0.3*cm))
|
| 197 |
model_data = [
|
| 198 |
+
["Detection Model", "YOLOv8-seg fine-tuned on CholecSeg8k (MICCAI 2020)"],
|
| 199 |
["LLM", "Meta Llama 3.1 8B Instruct"],
|
| 200 |
["Inference", "Modal GPU (T4)"],
|
| 201 |
["Dataset", "CholecSeg8k β 8,080 frames, 13 classes"],
|
|
|
|
| 203 |
]
|
| 204 |
model_table = Table(model_data, colWidths=[4.5*cm, 12*cm])
|
| 205 |
model_table.setStyle(TableStyle([
|
| 206 |
+
('FONTNAME', (0,0), (0,-1), 'Helvetica-Bold'), ('FONTSIZE', (0,0), (-1,-1), 8),
|
|
|
|
| 207 |
('TEXTCOLOR', (0,0), (0,-1), colors.HexColor('#203a43')),
|
| 208 |
('TEXTCOLOR', (1,0), (1,-1), colors.HexColor('#555555')),
|
| 209 |
('VALIGN', (0,0), (-1,-1), 'TOP'),
|
| 210 |
+
('TOPPADDING', (0,0), (-1,-1), 3), ('BOTTOMPADDING', (0,0), (-1,-1), 3),
|
|
|
|
| 211 |
('ROWBACKGROUNDS', (0,0), (-1,-1), [colors.HexColor('#f5f5f5'), colors.white]),
|
| 212 |
]))
|
| 213 |
story.append(model_table)
|
| 214 |
story.append(Spacer(1, 0.4*cm))
|
|
|
|
|
|
|
| 215 |
story.append(HRFlowable(width="100%", thickness=1, color=colors.HexColor('#203a43')))
|
| 216 |
story.append(Spacer(1, 0.2*cm))
|
| 217 |
story.append(Paragraph(
|
| 218 |
+
"DISCLAIMER: This report is generated by an AI research prototype for educational purposes only. "
|
| 219 |
"It is NOT a medical device and must not be used for clinical decision-making. "
|
| 220 |
"All demo footage is from the publicly available CholecSeg8k research dataset β no real patient data involved.",
|
| 221 |
+
footer_style))
|
| 222 |
+
story.append(Paragraph("Built for Build Small Hackathon 2026", footer_style))
|
|
|
|
|
|
|
| 223 |
doc.build(story)
|
| 224 |
return pdf_path
|
| 225 |
|
| 226 |
|
| 227 |
def segment_image(input_image, conf_threshold=0.25):
|
| 228 |
+
global last_result, chat_context
|
| 229 |
if input_image is None:
|
| 230 |
+
return (None, "Please upload a surgical frame to begin.", "No image provided.",
|
| 231 |
+
"No explanation yet.", gr.update(visible=False),
|
| 232 |
+
gr.update(visible=False), gr.update(visible=False),
|
| 233 |
+
gr.update(visible=False), gr.update(visible=False), [])
|
| 234 |
|
| 235 |
+
detector = get_detector()
|
| 236 |
image_bytes = pil_to_bytes(input_image)
|
| 237 |
result = detector.run.remote(image_bytes, conf_threshold)
|
| 238 |
|
|
|
|
| 262 |
else:
|
| 263 |
alert = "All clear β no critical structures flagged."
|
| 264 |
|
| 265 |
+
tissue_list = [n for n in seen.keys() if n != "Black Background"]
|
| 266 |
+
explanation = "No tissues detected to explain."
|
| 267 |
+
if tissue_list and client:
|
| 268 |
+
prompt = (
|
| 269 |
+
f"You are a surgical anatomy teacher helping a junior medical resident. "
|
| 270 |
+
f"These tissues and instruments were detected in a laparoscopic cholecystectomy frame: {', '.join(tissue_list)}. "
|
| 271 |
+
f"In 3 sentences, explain what the resident should know about these structures β "
|
| 272 |
+
f"what they are, why they matter, and what to be careful about."
|
| 273 |
+
)
|
| 274 |
+
try:
|
| 275 |
+
response = client.chat_completion([{"role": "user", "content": prompt}], max_tokens=180, temperature=0.4)
|
| 276 |
+
explanation = response.choices[0].message.content.strip()
|
| 277 |
+
except Exception as e:
|
| 278 |
+
explanation = f"Explanation unavailable: {str(e)}"
|
| 279 |
+
|
| 280 |
+
# Store context for chat
|
| 281 |
+
chat_context = {
|
| 282 |
+
"tissue_list": tissue_list,
|
| 283 |
+
"alert": alert,
|
| 284 |
+
"initial_explanation": explanation
|
| 285 |
+
}
|
| 286 |
|
|
|
|
| 287 |
last_result = {
|
| 288 |
+
"original": input_image, "annotated": annotated_image,
|
| 289 |
+
"seen": seen, "alert": alert, "explanation": explanation
|
|
|
|
|
|
|
|
|
|
| 290 |
}
|
| 291 |
|
| 292 |
+
# Generate suggested questions
|
| 293 |
+
suggested = generate_suggested_questions(tissue_list) if tissue_list else []
|
| 294 |
+
q1 = suggested[0] if len(suggested) > 0 else ""
|
| 295 |
+
q2 = suggested[1] if len(suggested) > 1 else ""
|
| 296 |
+
q3 = suggested[2] if len(suggested) > 2 else ""
|
| 297 |
+
|
| 298 |
+
# Initial chat message from assistant
|
| 299 |
+
initial_chat = [{"role": "assistant", "content": f"I've analysed the frame. I detected: **{', '.join(tissue_list) if tissue_list else 'no tissues'}**.\n\n{explanation}\n\nFeel free to ask me anything about these structures or general laparoscopic surgery!"}]
|
| 300 |
+
|
| 301 |
+
return (annotated_image, summary, alert, explanation,
|
| 302 |
+
gr.update(visible=True), # pdf_btn
|
| 303 |
+
gr.update(visible=True), # chat section
|
| 304 |
+
gr.update(value=q1, visible=bool(q1)),
|
| 305 |
+
gr.update(value=q2, visible=bool(q2)),
|
| 306 |
+
gr.update(value=q3, visible=bool(q3)),
|
| 307 |
+
initial_chat)
|
| 308 |
+
|
| 309 |
+
|
| 310 |
+
def chat_response(message, history):
|
| 311 |
+
global chat_context
|
| 312 |
+
if not message.strip():
|
| 313 |
+
return history, ""
|
| 314 |
+
|
| 315 |
+
tissue_list = chat_context.get("tissue_list", [])
|
| 316 |
+
alert = chat_context.get("alert", "")
|
| 317 |
+
|
| 318 |
+
if tissue_list:
|
| 319 |
+
system_prompt = (
|
| 320 |
+
f"You are SurgiSight, an expert surgical anatomy assistant helping medical trainees. "
|
| 321 |
+
f"The current laparoscopic frame shows these detected tissues/instruments: {', '.join(tissue_list)}. "
|
| 322 |
+
f"Safety status: {alert}. "
|
| 323 |
+
f"Answer questions about these specific structures or general laparoscopic/surgical questions. "
|
| 324 |
+
f"Be concise, educational, and clinically accurate. Use 2-4 sentences max per response."
|
| 325 |
+
)
|
| 326 |
+
else:
|
| 327 |
+
system_prompt = (
|
| 328 |
+
"You are SurgiSight, an expert surgical anatomy assistant for medical trainees. "
|
| 329 |
+
"Answer general laparoscopic surgery and anatomy questions concisely and accurately. "
|
| 330 |
+
"Use 2-4 sentences max per response."
|
| 331 |
+
)
|
| 332 |
+
|
| 333 |
+
messages = [{"role": "system", "content": system_prompt}]
|
| 334 |
+
for msg in history:
|
| 335 |
+
messages.append({"role": msg["role"], "content": msg["content"]})
|
| 336 |
+
messages.append({"role": "user", "content": message})
|
| 337 |
+
|
| 338 |
+
try:
|
| 339 |
+
response = client.chat_completion(messages, max_tokens=200, temperature=0.5)
|
| 340 |
+
reply = response.choices[0].message.content.strip()
|
| 341 |
+
except Exception as e:
|
| 342 |
+
reply = f"Sorry, I couldn't process that: {str(e)}"
|
| 343 |
+
|
| 344 |
+
history.append({"role": "user", "content": message})
|
| 345 |
+
history.append({"role": "assistant", "content": reply})
|
| 346 |
+
return history, ""
|
| 347 |
+
|
| 348 |
+
|
| 349 |
+
def use_suggested(question, history):
|
| 350 |
+
"""Fill chat with a suggested question and immediately get response."""
|
| 351 |
+
return chat_response(question, history)
|
| 352 |
|
| 353 |
|
| 354 |
def export_pdf():
|
| 355 |
global last_result
|
| 356 |
if not last_result:
|
| 357 |
return None
|
| 358 |
+
return generate_pdf(
|
| 359 |
+
last_result["original"], last_result["annotated"],
|
| 360 |
+
last_result["seen"], last_result["alert"], last_result["explanation"]
|
|
|
|
|
|
|
|
|
|
| 361 |
)
|
|
|
|
| 362 |
|
| 363 |
|
| 364 |
css = """
|
|
|
|
| 373 |
#danger-box textarea { font-family: 'Courier New', monospace !important; font-size: 0.9rem !important; font-weight: bold !important; background: #1a0a0a !important; color: #ff6b6b !important; border-radius: 10px !important; border: 1px solid #ff4444 !important; }
|
| 374 |
#explain-box textarea { font-family: 'Inter', sans-serif !important; font-size: 0.88rem !important; line-height: 1.7 !important; background: #0a1a0f !important; color: #6ee7b7 !important; border-radius: 10px !important; border: 1px solid #34d399 !important; }
|
| 375 |
.footer-note { text-align: center; font-size: 0.78rem; color: #888; margin-top: 16px; padding-bottom: 24px; }
|
| 376 |
+
#suggested-q button { background: rgba(32,58,67,0.08) !important; border: 1px solid #203a43 !important; color: #203a43 !important; border-radius: 999px !important; font-size: 0.82rem !important; padding: 6px 14px !important; margin: 2px !important; }
|
| 377 |
+
#suggested-q button:hover { background: #203a43 !important; color: white !important; }
|
| 378 |
"""
|
| 379 |
|
| 380 |
header_html = """
|
|
|
|
| 382 |
<h1>π¬ Surgical Tissue Segmentation</h1>
|
| 383 |
<p>Upload a laparoscopic surgery frame β or click any example below. The AI identifies tissues, flags danger zones, and explains anatomy for surgical trainees.</p>
|
| 384 |
<div class="badge-row">
|
| 385 |
+
<span class="badge">YOLOv8-seg</span>
|
| 386 |
<span class="badge">Llama 3.1 8B</span>
|
| 387 |
<span class="badge">Modal GPU</span>
|
| 388 |
<span class="badge">CholecSeg8k Dataset</span>
|
|
|
|
| 401 |
|
| 402 |
with gr.Blocks(title="SurgiSight β Surgical Tissue Segmentation") as demo:
|
| 403 |
gr.HTML(header_html)
|
| 404 |
+
|
| 405 |
+
# ββ Input / Output ββββββββββββββββββββββββββββββββββββββββββββββββββββββ
|
| 406 |
with gr.Row():
|
| 407 |
with gr.Column(scale=1):
|
| 408 |
input_img = gr.Image(type="pil", label="Input β Laparoscopic Frame", height=350)
|
|
|
|
| 417 |
placeholder="Safety alert will appear here after running segmentation...")
|
| 418 |
output_text = gr.Textbox(label="Detected Tissues & Confidence", lines=6, elem_id="output-text",
|
| 419 |
placeholder="Tissue detection results will appear here...")
|
| 420 |
+
explain_box = gr.Textbox(label="π§ Initial Anatomy Explanation",
|
| 421 |
+
lines=4, elem_id="explain-box",
|
| 422 |
placeholder="AI anatomy explanation will appear here after segmentation...")
|
| 423 |
|
| 424 |
+
# ββ PDF button ββββββββββββββββββββββββββββββββββββββββββββββββββββββββββ
|
| 425 |
with gr.Row():
|
| 426 |
+
pdf_btn = gr.Button("π Download Full Report (PDF)", visible=False, size="lg")
|
| 427 |
pdf_output = gr.File(label="Your Report", visible=False)
|
| 428 |
|
| 429 |
+
# ββ Chat Section ββββββββββββββββββββββββββββββββββββββββββββββββββββββββ
|
| 430 |
+
with gr.Column(visible=False) as chat_section:
|
| 431 |
+
gr.HTML("<hr style='margin:20px 0;border-color:#e0e0e0'><h3 style='margin-bottom:8px'>π¬ Ask the AI β Follow-up Questions</h3><p style='font-size:0.85rem;color:#666;margin-bottom:12px'>Ask anything about the detected tissues or general laparoscopic surgery</p>")
|
| 432 |
+
|
| 433 |
+
# Suggested question chips
|
| 434 |
+
with gr.Row(elem_id="suggested-q"):
|
| 435 |
+
sq1 = gr.Button("", visible=False, size="sm")
|
| 436 |
+
sq2 = gr.Button("", visible=False, size="sm")
|
| 437 |
+
sq3 = gr.Button("", visible=False, size="sm")
|
| 438 |
+
|
| 439 |
+
chatbot = gr.Chatbot(
|
| 440 |
+
label="SurgiSight Chat",
|
| 441 |
+
type="messages",
|
| 442 |
+
height=350,
|
| 443 |
+
show_label=False,
|
| 444 |
+
avatar_images=(None, "https://huggingface.co/front/assets/huggingface_logo-noborder.svg")
|
| 445 |
+
)
|
| 446 |
+
|
| 447 |
+
with gr.Row():
|
| 448 |
+
chat_input = gr.Textbox(
|
| 449 |
+
placeholder="Ask about detected tissues, surgical anatomy, or any surgery question...",
|
| 450 |
+
show_label=False, scale=5, container=False
|
| 451 |
+
)
|
| 452 |
+
send_btn = gr.Button("Send β€", variant="primary", scale=1)
|
| 453 |
+
|
| 454 |
gr.Examples(
|
| 455 |
examples=[
|
| 456 |
["examples/frame_80_endo.png"],
|
|
|
|
| 462 |
examples_per_page=3
|
| 463 |
)
|
| 464 |
|
| 465 |
+
gr.HTML(footer_html)
|
| 466 |
+
|
| 467 |
+
# ββ Event handlers ββββββββββββββββββββββββββββββββββββββββββββββββββββββ
|
| 468 |
run_btn.click(
|
| 469 |
fn=segment_image,
|
| 470 |
inputs=[input_img, conf_slider],
|
| 471 |
+
outputs=[output_img, output_text, danger_box, explain_box,
|
| 472 |
+
pdf_btn, chat_section, sq1, sq2, sq3, chatbot],
|
| 473 |
show_progress="full"
|
| 474 |
)
|
| 475 |
|
| 476 |
+
pdf_btn.click(fn=export_pdf, inputs=[], outputs=[pdf_output]
|
|
|
|
|
|
|
|
|
|
| 477 |
).then(fn=lambda: gr.update(visible=True), outputs=[pdf_output])
|
| 478 |
|
| 479 |
+
# Send button / Enter key
|
| 480 |
+
send_btn.click(fn=chat_response, inputs=[chat_input, chatbot], outputs=[chatbot, chat_input])
|
| 481 |
+
chat_input.submit(fn=chat_response, inputs=[chat_input, chatbot], outputs=[chatbot, chat_input])
|
| 482 |
+
|
| 483 |
+
# Suggested question chips β send directly into chat
|
| 484 |
+
sq1.click(fn=use_suggested, inputs=[sq1, chatbot], outputs=[chatbot, chat_input])
|
| 485 |
+
sq2.click(fn=use_suggested, inputs=[sq2, chatbot], outputs=[chatbot, chat_input])
|
| 486 |
+
sq3.click(fn=use_suggested, inputs=[sq3, chatbot], outputs=[chatbot, chat_input])
|
| 487 |
|
| 488 |
if __name__ == "__main__":
|
| 489 |
+
demo.launch(css=css)
|